{"canonical":"https://abierto.us/opportunities/140g0326r0005","key":"140G0326R0005","url":"https://abierto.us/opportunities/140g0326r0005","title":"B--IHNV GENOTYPING PROGRAM UPGRADE","solicitation_number":"140G0326R0005","notice_type":"o","open":false,"response_deadline":"2026-09-08T17:00:00Z","first_posted":"2026-08-31","last_posted":"2026-09-03","department":"INTERIOR, DEPARTMENT OF THE","subagency":"US GEOLOGICAL SURVEY","office":"OFFICE OF ACQUISITON GRANTS","naics":"541990","psc":"B516","set_aside":"SBA","place_state":null,"winner":null,"award_amount":null,"publications":[{"notice_id":"cba04536ea414b50ad2929011b90fada","title":"IHNV GENOTYPING PROGRAM UPGRADE","solicitation_number":"140G0326R0005","notice_type":"o","base_type":"o","posted":"2026-08-31","posted_at":null,"due_at":"2026-09-08T17:00:00Z","due_date":"2026-09-08","cancelled":null,"archived":null,"archive_date":"2026-10-31","award_number":null,"awardee_name":null,"amount":null,"link_sam":"https://sam.gov/workspace/contract/opp/cba04536ea414b50ad2929011b90fada/view","enriched":false,"history":[]},{"notice_id":"f25deb6fabcd48898c81a9f2e7d79cea","title":"B--IHNV GENOTYPING PROGRAM UPGRADE","solicitation_number":"140G0326R0005","notice_type":"o","base_type":"o","posted":"2026-09-03","posted_at":null,"due_at":"2026-09-08T17:00:00Z","due_date":"2026-09-08","cancelled":null,"archived":null,"archive_date":"2026-09-23","award_number":null,"awardee_name":null,"amount":null,"link_sam":"https://sam.gov/workspace/contract/opp/f25deb6fabcd48898c81a9f2e7d79cea/view","enriched":false,"history":[]}],"latest_notice_id":"f25deb6fabcd48898c81a9f2e7d79cea","first_type":"o","notices":[{"dates":{"posted":"2026-08-31","response_deadline":{"raw":"2026-09-08T10:00:00-07:00","utc":"2026-09-08T17:00:00Z","date":"2026-09-08","time":"10:00:00","utc_offset_seconds":-25200}},"links":{"sam":"https://sam.gov/workspace/contract/opp/cba04536ea414b50ad2929011b90fada/view"},"naics":{"codes":["541990"],"primary":"541990"},"title":"IHNV GENOTYPING PROGRAM UPGRADE","agency":{"office":{"code":"140G03","name":"OFFICE OF ACQUISITON GRANTS"},"subtier":{"code":"1434","name":"US GEOLOGICAL SURVEY"},"department":{"code":"014","name":"INTERIOR, DEPARTMENT OF THE"},"office_address":{"zip":"95819","city":"SACRAMENTO","state":"CA","country":"USA"},"organization_type":"OFFICE"},"status":{"active":true,"archive_date":"2026-10-31","archive_type":"auto_custom"},"contacts":[{"fax":"(916) 278-9339","name":"Adam, Elizabeth","role":"primary","email":"elizabeth_adam@ios.doi.gov","phone":"(916) 278-9441"}],"base_type":{"code":"o","label":"Solicitation"},"notice_id":"cba04536ea414b50ad2929011b90fada","set_aside":{"code":"SBA","label":"Total Small Business Set-Aside (FAR 19.5)"},"provenance":{"extract":{"url":"https://s3.amazonaws.com/falextracts/Contract%20Opportunities/datagov/ContractOpportunitiesFullCSV.csv","etag":"\"3f59209463433eba6899e195a597c64d-29\"","fetched_at":"2026-09-16T07:50:12.777658Z","row_sha256":"448db4ed13253a1154168ecd8081e6fcba2e929db088a21f2831c113f06f18f0","last_modified":"2026-09-16T03:30:52Z"},"updated_at":"2026-09-16T07:50:12.777658Z","first_seen_at":"2026-09-15T22:52:52.472456Z"},"description":{"text":"REQUEST FOR QUOTE Upgrade of Infectious Hematopoietic Necrosis Virus (IHNV) Genotyping Program, Seattle, WA INTRODUCTION This is a solicitation for commercial items prepared in accordance with the format in Revolutionary FAR Overhaul (RFO) Part 12 as supplemented with additional information included in this notice. SMALL BUSINESS SET-ASIDE DESCRIPTION The US Geological Survey (USGS), Western Fisheries Research Center (WFRC), requires services for the upgrade of the Infectious Hematopoietic Necrosis Virus (IHNV) genotyping program as described in the attached Statement of Work (SOW). The USGS requires a base year and one option year. RELEVANT INFORMATION The North American Industry Classification System (NAICS) code 541990 All other Scientific and Professional Services and associated size standard $19.5 million applies to this announcement, along with Product Service Code B516 Special Studies/Analysis - Animal/Fisheries. Most services may be performed remotely from the contractor's location and occasionally at the USGS WFRC located at 66505 N.E. 65th Street, Seattle, WA. QUESTIONS Questions must be sent to elizabeth_adam@ios.doi.gov by Thursday, September 3, 2026, at 10:00am Pacific Time. SUBMISSION OF QUOTES Quotes shall only be accepted through electronic mail addressed to the Contracting Officer at elizabeth_adam@ios.doi.gov. All quote documents required by this solicitation must be uploaded and received in their entirety no later than Tuesday, September 8, 2026, at 10:00am Pacific Time. Quotes submitted by hardcopy or any web portal shall not be accepted or considered EVALUATION OF QUOTES Quotes will be evaluated by Tradeoff. Evaluation factors include Experience, Technical Capability, Past Performance, and Price. See Provision 52.212-2 herein for detailed information. Offerors are to include a technical description of the services being offered in sufficient detail to evaluate compliance with the requirements in the solicitation as seen in the Evaluation Factors (see Attachment). This may include resumes/CVs, references, and other documents, if necessary. ESTIMATED PERIOD OF PERFORMANCE Base Year: 10/01/2026 to 09/30/2027 Option Year 1: 10/01/2027 to 09/30/2028 Offerors shall return the following: 1. Signed SF-18 2. Firm, fixed price quote. Associated travel costs must be included in the firm fixed price quote. 3. Technical information including work plan, CV, experience, past performance, references 4. System for Award Management (SAM) Unique Identification Entity (UEI) Attached Pages: 1. Statement of Work 2. Clauses and Provisions","origin":"extract"},"notice_type":{"code":"o","label":"Solicitation"},"schema_version":1,"solicitation_number":"140G0326R0005","product_service_code":"B516"},{"dates":{"posted":"2026-09-03","response_deadline":{"raw":"2026-09-08T10:00:00-07:00","utc":"2026-09-08T17:00:00Z","date":"2026-09-08","time":"10:00:00","utc_offset_seconds":-25200}},"links":{"sam":"https://sam.gov/workspace/contract/opp/f25deb6fabcd48898c81a9f2e7d79cea/view"},"naics":{"codes":["541990"],"primary":"541990"},"title":"B--IHNV GENOTYPING PROGRAM UPGRADE","agency":{"office":{"code":"140G03","name":"OFFICE OF ACQUISITON GRANTS"},"subtier":{"code":"1434","name":"US GEOLOGICAL SURVEY"},"department":{"code":"014","name":"INTERIOR, DEPARTMENT OF THE"},"office_address":{"zip":"95819","city":"SACRAMENTO","state":"CA","country":"USA"},"organization_type":"OFFICE"},"status":{"active":true,"archive_date":"2026-09-23","archive_type":"auto15"},"contacts":[{"fax":"(916) 278-9339","name":"Adam, Elizabeth","role":"primary","email":"elizabeth_adam@ios.doi.gov","phone":"(916) 278-9441"}],"base_type":{"code":"o","label":"Solicitation"},"notice_id":"f25deb6fabcd48898c81a9f2e7d79cea","set_aside":{"code":"SBA","label":"Total Small Business Set-Aside (FAR 19.5)"},"provenance":{"extract":{"url":"https://s3.amazonaws.com/falextracts/Contract%20Opportunities/datagov/ContractOpportunitiesFullCSV.csv","etag":"\"3f59209463433eba6899e195a597c64d-29\"","fetched_at":"2026-09-16T07:50:12.777658Z","row_sha256":"be959d51b4eea6b83a7f95f5b60a2a48b5ef8a54d94d14f3d6ea779dbbbcfd42","last_modified":"2026-09-16T03:30:52Z"},"updated_at":"2026-09-16T07:50:12.777658Z","first_seen_at":"2026-09-15T22:52:52.472456Z"},"description":{"text":"The purpose of this amendment is to answer vendor questions. The period for questions is closed, and no further questions will be accepted. The due date for quotes remains the same, September 8, 2026, at 10:00am PDT. 1. How many data entries are currently in the database? approximately 3000 2. How many samples need to be added to the database from recent years? How many samples per year are being added Approximately 400. The number per year is not a set number but varies depending on field events and how many virus isolates our fish health partners to send in for genotyping. 3. Shall the previously used database stay in place? Or should the deliverables include a plan for long term database plan which may include development of a new structure/system? At this point we are aiming to update the current in-house excel database that has been in place for many years. That database will continue to be our main source of curated information. Future plans for any new system are desirable but beyond the financial scope of this contract. 4. Where (what lab) is the genotyping data being produced currently? The majority of genotyping is done at our lab, the USGS Western Fisheries Research Center, where the genotyping program originated and has been hosted since the 1990s. We also occasionally get isolate metadata and genotyped sequences from partners at the Northwest Indian Fish Commission and Oregon Department fo Fish and Wildlife. 5. What technology is being used for that? Microarray? Sanger sequencing? Next generation sequencing? Other? RNA is extracted from each virus isolate and a fragment containing the midG sequence is generated by PCR. The genotype consensus sequences are generated by Sanger or NGS either in-house or by sending the PCR fragement to a commercial sequencing service. Metadata is tracked using the in-house database that also contains the sequence generated. and the designated genotype number. 6. What is the size of each genotype that will be added or produced? Is it the full IHNV sequence or just select regions? IHNV genotypes have been established in North America using a 303 nt mid-G region that is a variable region in the virus glycoprotein (G) gene. This short region has proven robust in comparison with phylogenies based on complete G genes (1610 nt) or full genomes ( ~ 11,132 nt). It is the only sequence that facilitates phylogenetic analyses with archive of genotype data for over 3000 virus isolates that represent IHNV in all of North America. 7. What database engine does the current database use (e.g., PostgreSQL, mySQL, etc.)? The current database is a large excel file containing all metadata associated with isolates and the genotyped sequence that is associated with each isolate. 8. How many WFRC staff need to be trained annually to conduct the IHNV typing? Once staff are trained they do not need to be trained annually but as needed when any changes in the system need to be implemented. Optimally there should be two staff members who are trained to conduct the IHNV genotyping. ********************************************","origin":"extract"},"notice_type":{"code":"o","label":"Solicitation"},"schema_version":1,"solicitation_number":"140G0326R0005","product_service_code":"B516"}],"due_at":"2026-09-08T17:00:00Z","due_date":"2026-09-08","closes_at":"2026-09-08T17:00:00Z","awardable":true,"dept_key":"d-014","dept_name":"INTERIOR, DEPARTMENT OF THE","sub_key":"s-1434","sub_name":"US GEOLOGICAL SURVEY","office_key":"o-140G03","office_name":"OFFICE OF ACQUISITON GRANTS","state":null,"country":null,"winner_key":null,"amount":null,"linked_awards":0,"cancelled":false,"archived":false,"updated_at":"2026-09-16T07:31:38.954589Z","principal_notice_id":"f25deb6fabcd48898c81a9f2e7d79cea","description":{"text":"The purpose of this amendment is to answer vendor questions. The period for questions is closed, and no further questions will be accepted. The due date for quotes remains the same, September 8, 2026, at 10:00am PDT. 1. How many data entries are currently in the database? approximately 3000 2. How many samples need to be added to the database from recent years? How many samples per year are being added Approximately 400. The number per year is not a set number but varies depending on field events and how many virus isolates our fish health partners to send in for genotyping. 3. Shall the previously used database stay in place? Or should the deliverables include a plan for long term database plan which may include development of a new structure/system? At this point we are aiming to update the current in-house excel database that has been in place for many years. That database will continue to be our main source of curated information. Future plans for any new system are desirable but beyond the financial scope of this contract. 4. Where (what lab) is the genotyping data being produced currently? The majority of genotyping is done at our lab, the USGS Western Fisheries Research Center, where the genotyping program originated and has been hosted since the 1990s. We also occasionally get isolate metadata and genotyped sequences from partners at the Northwest Indian Fish Commission and Oregon Department fo Fish and Wildlife. 5. What technology is being used for that? Microarray? Sanger sequencing? Next generation sequencing? Other? RNA is extracted from each virus isolate and a fragment containing the midG sequence is generated by PCR. The genotype consensus sequences are generated by Sanger or NGS either in-house or by sending the PCR fragement to a commercial sequencing service. Metadata is tracked using the in-house database that also contains the sequence generated. and the designated genotype number. 6. What is the size of each genotype that will be added or produced? Is it the full IHNV sequence or just select regions? IHNV genotypes have been established in North America using a 303 nt mid-G region that is a variable region in the virus glycoprotein (G) gene. This short region has proven robust in comparison with phylogenies based on complete G genes (1610 nt) or full genomes ( ~ 11,132 nt). It is the only sequence that facilitates phylogenetic analyses with archive of genotype data for over 3000 virus isolates that represent IHNV in all of North America. 7. What database engine does the current database use (e.g., PostgreSQL, mySQL, etc.)? The current database is a large excel file containing all metadata associated with isolates and the genotyped sequence that is associated with each isolate. 8. How many WFRC staff need to be trained annually to conduct the IHNV typing? Once staff are trained they do not need to be trained annually but as needed when any changes in the system need to be implemented. Optimally there should be two staff members who are trained to conduct the IHNV genotyping. ********************************************","html":null,"origin":"extract"},"contacts":[{"fax":"(916) 278-9339","name":"Adam, Elizabeth","role":"primary","email":"elizabeth_adam@ios.doi.gov","phone":"(916) 278-9441"}],"place_of_performance":null,"office_address":{"zip":"95819","city":"SACRAMENTO","state":"CA","country":"USA"},"naics_codes":["541990"],"award":null,"attachments":[],"awards":[],"related":[{"key":"140G0326Q0222","latest_notice_id":"99a267531b294ed58dac40f2252bdcf8","title":"HIGH-ACCURACY MAPS POST-FIRE VEGETATION","solicitation_number":"140G0326Q0222","notice_type":"o","first_type":"o","first_posted":"2026-09-14","last_posted":"2026-09-14","notices":1,"due_at":"2026-09-17T00:00:00Z","due_date":"2026-09-16","closes_at":"2026-09-17T00:00:00Z","awardable":true,"open":true,"dept_key":"d-014","dept_name":"INTERIOR, DEPARTMENT OF THE","sub_key":"s-1434","sub_name":"US GEOLOGICAL SURVEY","office_key":"o-140G03","office_name":"OFFICE OF ACQUISITON GRANTS","naics":"541370","psc":"T002","set_aside":"SBA","state":"ID","country":"USA","winner":null,"winner_key":null,"amount":null,"linked_awards":0,"cancelled":false,"archived":false,"updated_at":"2026-09-16T07:31:38.954589Z"},{"key":"140G0126Q0297","latest_notice_id":"f034b9cfbe204329bd69355dffa8f7f5","title":"MINERAL SEPARATION SERVICES","solicitation_number":"140G0126Q0297","notice_type":"k","first_type":"k","first_posted":"2026-09-11","last_posted":"2026-09-11","notices":1,"due_at":"2026-09-17T15:00:00Z","due_date":"2026-09-17","closes_at":"2026-09-17T15:00:00Z","awardable":true,"open":true,"dept_key":"d-014","dept_name":"INTERIOR, DEPARTMENT OF THE","sub_key":"s-1434","sub_name":"US GEOLOGICAL SURVEY","office_key":"o-140G03","office_name":"OFFICE OF ACQUISITON GRANTS","naics":"541380","psc":"B517","set_aside":null,"state":null,"country":null,"winner":null,"winner_key":null,"amount":null,"linked_awards":0,"cancelled":false,"archived":false,"updated_at":"2026-09-16T07:31:38.954589Z"},{"key":"140G0326Q0218","latest_notice_id":"ebfdb6d2bb154d70ad7af91bb9055cc5","title":"B--ONYX RANCH SVRA PROJECT","solicitation_number":"140G0326Q0218","notice_type":"o","first_type":"r","first_posted":"2026-08-28","last_posted":"2026-09-11","notices":3,"due_at":"2026-09-17T22:00:00Z","due_date":"2026-09-17","closes_at":"2026-09-17T22:00:00Z","awardable":true,"open":true,"dept_key":"d-014","dept_name":"INTERIOR, DEPARTMENT OF THE","sub_key":"s-1434","sub_name":"US GEOLOGICAL SURVEY","office_key":"o-140G03","office_name":"OFFICE OF ACQUISITON GRANTS","naics":"541620","psc":"B510","set_aside":null,"state":null,"country":null,"winner":null,"winner_key":null,"amount":null,"linked_awards":0,"cancelled":false,"archived":false,"updated_at":"2026-09-16T07:31:38.954589Z"},{"key":"140G0326Q0219","latest_notice_id":"71da6f1ab4c442d9b0b7bfe26f5245a3","title":"TELEDYNE FLIR T540 BUNDLE","solicitation_number":"140G0326Q0219","notice_type":"o","first_type":"r","first_posted":"2026-09-09","last_posted":"2026-09-11","notices":2,"due_at":"2026-09-18T22:00:00Z","due_date":"2026-09-18","closes_at":"2026-09-18T22:00:00Z","awardable":true,"open":true,"dept_key":"d-014","dept_name":"INTERIOR, DEPARTMENT OF THE","sub_key":"s-1434","sub_name":"US GEOLOGICAL SURVEY","office_key":"o-140G03","office_name":"OFFICE OF ACQUISITON GRANTS","naics":"334511","psc":"6650","set_aside":null,"state":null,"country":null,"winner":null,"winner_key":null,"amount":null,"linked_awards":0,"cancelled":false,"archived":false,"updated_at":"2026-09-16T07:31:38.954589Z"},{"key":"140G0326Q0216","latest_notice_id":"611e441e57fd41a99b8c7240d041c683","title":"GREAT EARTHQUAKES SOCIAL SCIENCE INITIATIVE","solicitation_number":"140G0326Q0216","notice_type":"o","first_type":"o","first_posted":"2026-09-10","last_posted":"2026-09-10","notices":1,"due_at":"2026-09-22T00:00:00Z","due_date":"2026-09-21","closes_at":"2026-09-22T00:00:00Z","awardable":true,"open":true,"dept_key":"d-014","dept_name":"INTERIOR, DEPARTMENT OF THE","sub_key":"s-1434","sub_name":"US GEOLOGICAL SURVEY","office_key":"o-140G03","office_name":"OFFICE OF ACQUISITON GRANTS","naics":"541690","psc":"B542","set_aside":"SBA","state":null,"country":null,"winner":null,"winner_key":null,"amount":null,"linked_awards":0,"cancelled":false,"archived":false,"updated_at":"2026-09-16T07:31:38.954589Z"}]}